PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0311479.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family DBB
Protein Properties Length: 241aa    MW: 26762.5 Da    PI: 4.3723
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0311479.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     +C+ +++++   +C+++  +lC +C  + H+       H++
  Lj0g3v0311479.1  4 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                     6*****************************65677777776 PP
2zf-B_box261.9e-084689442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       C++++++++   C++ ++ lC++C   +H g      H+++p+
  Lj0g3v0311479.1 46 LLCERCNSQPAFVRCTEEKVSLCQNCDWVGH-GastsstHKRQPI 89
                     57*****************************.6589999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
SMARTSM003366.1E-9447IPR000315B-box-type zinc finger
CDDcd000211.17E-6447No hitNo description
PROSITE profilePS501199.8124389IPR000315B-box-type zinc finger
PfamPF006433.6E-54689IPR000315B-box-type zinc finger
CDDcd000218.05E-64789No hitNo description
SMARTSM003360.164889IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGYMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC  60
TEEKVSLCQN CDWVGHGAST SSTHKRQPIN CYSGCPAASE LSSIWSFVDD IPSMSDSTCE  120
QELGLMSINE NRGENGWVPP ENQNVSGSDQ GTDLPGSDKR WIGTSSKPEL SSEPRVQDQP  180
AGPSNEYLPK LYCHATKCAS IREDDDLYGD FNMDEVNLNF ENYEELFGMA LTHSESLFEN  240
G
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0311479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406548.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_017406549.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_017406550.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_017406551.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_017406553.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_017406554.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA92e-79COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0L9T8J61e-138A0A0L9T8J6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S8471e-138A0A0S3S847_PHAAN; Uncharacterized protein
STRINGGLYMA20G07051.21e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.19e-82B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]