PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0313589.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 89aa    MW: 10180 Da    PI: 9.1544
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0313589.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB62.87.5e-20789592
            NF-YB  5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
                     + +lP   v++im++vlP +akis++aket+ +cvs+fi+ +    s+k    ++k ++ +dll a+ ++ +++yv++l  +  +++e
  Lj0g3v0313589.1  7 NLHLPKEAVVKIMRRVLPLHAKISDEAKETMVKCVSKFITTIL---SQKG--AQQKVVSVEDLLLAMEKINLNEYVQSLLNFYDRFQE 89
                     6689999*****************************9987776...4554..46799**********************999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-20589IPR009072Histone-fold
SuperFamilySSF471134.95E-18789IPR009072Histone-fold
PfamPF008083.1E-11968IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MLMGSSNLHL PKEAVVKIMR RVLPLHAKIS DEAKETMVKC VSKFITTILS QKGAQQKVVS  60
VEDLLLAMEK INLNEYVQSL LNFYDRFQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-19189497NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0313589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.12e-20NF-YB family protein