PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0317419.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 201aa MW: 21937.5 Da PI: 10.4171

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0317419.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.6e-14	1	45	10	54
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + +NRe+ArrsR+RK+a + Le+ v +L++eN++L k+ + ++ Lj0g3v0317419.1 1 MLSNRESARRSRRRKQAHLTDLETQVSQLKGENSSLLKRFSDVSQ 45 579*********************************999877666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-10	1	56	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-12	1	43	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.783	1	48	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.37E-10	1	45	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.7E-11	2	47	No hit	No description
Pfam	PF12498	2.0E-43	63	190	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MLSNRESARR SRRRKQAHLT DLETQVSQLK GENSSLLKRF SDVSQKFNDS AVDNRVLKAD 60 VETLRAKVKM AEETVKRITG LNPMFHAMSE ISSMGMPPFA GSPSDNSVDA AVPVQDNSHH 120 QQFYRPVSNN PKPRHDLRVN NGLGEISSIE NVQQQNGAAV AGGNKMGQAA APPQRVASLE 180 HLQKRIRGGV DSCGAPSNGE Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	15	RRSRRRKQ
2	10	15	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.279	1e-141	cell culture\| floral bud\| pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0317419.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009810	0.0	AP009810.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT29J15, TM0280b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495799.1	1e-103	light-inducible protein CPRF2-like isoform X1
Refseq	XP_004495800.1	1e-103	light-inducible protein CPRF2-like isoform X2
Swissprot	Q99090	1e-71	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A1S2XWX9	1e-101	A0A1S2XWX9_CICAR; light-inducible protein CPRF2-like isoform X1
TrEMBL	A0A1S2XY94	1e-102	A0A1S2XY94_CICAR; light-inducible protein CPRF2-like isoform X2
TrEMBL	A0A2K3NI45	1e-103	A0A2K3NI45_TRIPR; Light-inducible CPRF2-like protein
STRING	XP_004495799.1	1e-102	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4176	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	1e-39	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]