PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0320919.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 173aa    MW: 19974.8 Da    PI: 6.5351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0320919.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.12.4e-25171441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      l pG+ F+P de lv +yLk++v +++l++ e+i+ +d++++ePw+Lp    k    +e++++f+    +  +  +   r++ sg W+   k +
  Lj0g3v0320919.1  17 LLPGYIFDPIDEVLVGFYLKRRVFSQPLPV-EIIPYFDVFQTEPWSLPgGdgK--IfNERKCFFYNIMGHDLK--NLDIRVAGSGQWRVMEKRN 105
                      579***************************.89***************53333..236778899988877765..5889999******988877 PP

              NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v  + ++e++  +++L f++g+   +++t+Wvmhe+rl
  Lj0g3v0320919.1 106 DVPIStNKEVIRKRNILNFWDGQGDCARRTKWVMHEFRL 144
                      776654888899999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-2711145IPR003441NAC domain
PROSITE profilePS5100527.44617164IPR003441NAC domain
PfamPF023652.6E-1219144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEDIIMTYED NDGAVRLLPG YIFDPIDEVL VGFYLKRRVF SQPLPVEIIP YFDVFQTEPW  60
SLPGGDGKIF NERKCFFYNI MGHDLKNLDI RVAGSGQWRV MEKRNDVPIS TNKEVIRKRN  120
ILNFWDGQGD CARRTKWVMH EFRLALIANP SKIKDAKNDK MGNNGEITND GSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-17101448140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0320919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352865.15e-47NAC domain-containing protein 83-like
TrEMBLA0A0L9U6B55e-41A0A0L9U6B5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVW85e-41A0A0S3RVW8_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-26NAC domain containing protein 83