PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0321019.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 223aa    MW: 24124.9 Da    PI: 6.6005
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0321019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer49.21.3e-155587437
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegt 37
                      +Y+eClkNhA+ +Gg+a+DGC Efm++ g egt
  Lj0g3v0321019.1 55 GKYRECLKNHAVGMGGYALDGCLEFMAA-GPEGT 87
                     68*************************9.55544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-95187IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-135689IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152316.4757114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-32147222IPR009057Homeodomain-like
SuperFamilySSF466894.4E-21148221IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-27161216IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDYDEQEEEL VMAGGGGASY DDDDSSLANP TRVKMPSPVD DPAAMMVVVR NTGKGKYREC  60
LKNHAVGMGG YALDGCLEFM AAGPEGTRHQ PPPGQPQYAA CYRATPAGYL HVAGPNRGSG  120
AATLALPIGG GPQGARELMD HDDVSDRSGG GGEGSNSRAG KRFRTKFTHE QKEKMLEFAE  180
SAGWRIQRHD DNVVEEFCNE IGVKRHVLKV WMHNNKHTLG KKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-261612181875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0321019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216790.11e-75zinc-finger homeodomain protein 1
SwissprotA2Z2591e-45ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0S3R2K26e-71A0A0S3R2K2_PHAAN; Uncharacterized protein
STRINGGLYMA02G04550.22e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-40homeobox protein 22