PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0321259.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 240aa MW: 27568.1 Da PI: 8.1363

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0321259.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.7e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+e++k++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel Lj0g3v0321259.1 62 EYYSEFSKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTQSKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNHELL 155 69***********9998877356667999**********99999*****************9988888************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-17	62	155	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSEEVGSMLV VYDDPSDQHS LSLGDTSSTE ESPDETRLSL ETANAAIPYI GQRFATHDAA 60 YEYYSEFSKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSTQ SKPQRNRKSS 120 RCGCQAYMRI SKTTEFGAPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DTDKNRILMF 180 AKTGISVHQM MRLMELEKCV EPGFLPFTEK DIRNLLQSFR KLDPEEESLD LLRMCRNIKE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0321259.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006588528.1	1e-167	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_028184456.1	1e-167	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	1e-146	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0B2PLU4	1e-166	A0A0B2PLU4_GLYSO; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A151T841	1e-167	A0A151T841_CAJCA; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	I1L7C4	1e-166	I1L7C4_SOYBN; Uncharacterized protein
STRING	GLYMA10G00380.1	1e-166	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-148	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]