PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0328219.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 175aa    MW: 19644.7 Da    PI: 9.4425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0328219.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294365123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC+ C+++Fs+   L  H  +H
  Lj0g3v0328219.1 43 YKCKTCNRRFSSFQALGGHRASH 65
                     9***********99999998887 PP
2zf-C2H211.50.0009292114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+Cg  F     L  H+r+H
  Lj0g3v0328219.1  92 HPCPICGHAFAIGQALGGHMRKH 114
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.61E-742114No hitNo description
PfamPF139121.2E-114267IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5124370IPR007087Zinc finger, C2H2
SMARTSM003550.0484365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139122.0E-792115IPR007087Zinc finger, C2H2
SMARTSM003550.292114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1292114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKRGREEESD QLDMANCLML LNKVGENEIK TNPSRDLNDH GAYKCKTCNR RFSSFQALGG  60
HRASHKKTKL MVSDLSCHAH SSKLQRSTTR MHPCPICGHA FAIGQALGGH MRKHRVAAIN  120
NHALPVLKKS RDADDETLMN LCLDLNLAPP DQNHLNLNYK LINLHTPALK LNCFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0328219.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224545.14e-61zinc finger protein ZAT11
TrEMBLA0A371GVP43e-58A0A371GVP4_MUCPR; Zinc finger protein ZAT12 (Fragment)
STRINGGLYMA15G04570.13e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-33C2H2 family protein