PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0332559.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

ERF

Protein Properties

Length: 256aa MW: 28516.4 Da PI: 4.9058

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0332559.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.9	5.2e-18	109	158	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+++AeIrd + ng r+++g+f+tae Aa a+++a+++ +g Lj0g3v0332559.1 109 FRGVRRRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAALSTRG 158 8*****.******44465..********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	5.0E-34	108	172	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.392	108	166	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.4E-10	109	120	IPR001471	AP2/ERF domain
Pfam	PF00847	2.2E-12	109	158	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.42E-21	109	167	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	6.5E-29	109	167	IPR001471	AP2/ERF domain
CDD	cd00018	2.65E-18	109	167	No hit	No description
PRINTS	PR00367	7.4E-10	132	148	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDFDSSFFQH QNLNSSFSNP SFSSESFSWE DFFFFNEDNN TLLPFIESSS DSNTSGSQLS 60 LTESSSSSTQ EVSSNSTQTE QVKLEPHTSS SPPPPPSPPP KEEITKRPFR GVRRRPWGKF 120 AAEIRDSTRN GVRVWIGTFD TAEAAALAYD QAALSTRGSM AVLNFPEEVV RESLQDMANK 180 PCEDGSSPVL ALKRNHTMRR KSKSNKATSH KRAKREETMQ LEINLSTNVI VLEDLGSEYL 240 DQLLSLTSSQ EIPFGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-27	109	168	15	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.22164	0.0	protoplast

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0332559.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787977	0.0	KC787977.1 Lotus corniculatus AP2/ERF (ERF077) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019433830.1	4e-97	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	Q8VYM0	2e-49	ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBL	A0A140WWG0	0.0	A0A140WWG0_LOTCO; AP2/ERF
STRING	XP_007144904.1	3e-88	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15185	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31230.1	1e-41	ethylene-responsive element binding factor 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886]