PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0343029.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

MYB_related

Protein Properties

Length: 76aa MW: 8633.82 Da PI: 8.9966

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0343029.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.9	2.8e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+Wk++++ g+ R+ k+c++rw +yl Lj0g3v0343029.1 14 KGPWTPEEDITLVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYL 61 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-26	5	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.47E-20	8	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.128	9	65	IPR017930	Myb domain
SMART	SM00717	5.1E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	7.43E-12	16	61	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MGRPPCCDKE GVKKGPWTPE EDITLVSYIQ EHGPGNWKAV PANTGLSRCS KSCRLRWTNY 60 LRPGIKRGNF TEQEEK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.25857	1e-127	floral bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0343029.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT137708	1e-124	BT137708.1 Lotus japonicus clone JCVI-FLLj-17B11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027359006.1	6e-50	myb-related protein 306-like
Swissprot	P81392	4e-47	MYB06_ANTMA; Myb-related protein 306
TrEMBL	I3SB61	2e-49	I3SB61_LOTJA; Uncharacterized protein
STRING	GLYMA13G05370.1	2e-48	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-48	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]