PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0344779.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 180aa    MW: 19712.6 Da    PI: 8.6096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0344779.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00113961123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ Fs+   L  H  +H
  Lj0g3v0344779.1 39 FECKTCNRQFSSFQALGGHRASH 61
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.51E-937110No hitNo description
PfamPF139121.2E-123863IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2423966IPR007087Zinc finger, C2H2
SMARTSM003550.23961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139124.6E-1087113IPR007087Zinc finger, C2H2
PROSITE profilePS501579.95188115IPR007087Zinc finger, C2H2
SMARTSM003550.588110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKREREIDSM TMANCLMLLS QGGEFETTTT STYSPSRVFE CKTCNRQFSS FQALGGHRAS  60
HKKPRLMAGN GDMELLHGSS SPPKPKTHEC SICGLEFAIG QALGGHMRRH RAENLSGNMM  120
QSSTTMSCSS GGSSLDSSPK NVMKAYKKIV LALDLNLTPF ENDLEFLKIG KATGLVDYLH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0344779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1414850.0BT141485.1 Lotus japonicus clone JCVI-FLLj-24I3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352863.12e-83zinc finger protein ZAT11-like
TrEMBLI3SFV21e-130I3SFV2_LOTJA; Uncharacterized protein
STRINGGLYMA18G52410.11e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-36C2H2 family protein