PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0345959.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 182aa    MW: 20743.7 Da    PI: 6.4997
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0345959.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-1171178295
                      EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS...-EEEEEE..........EEETTEEEE-TTH.HHHHHHHT--TT- CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg...rsWevkliy........rkksgryvltkGW.keFvkangLkegD 78 
                      +k+lt+sd + ++rl +pk+ ae+           ++ ++++++e+g     W+v  +         +++sg+yv+ ++W k+Fvk  gLk gD
  Lj0g3v0345959.1  71 KKKLTQSDLGYLSRLLIPKDLAEDLvlpvlT----RDAQMQVYTENGtkiLIWDVDTQSshylvfklWNSSGSYVFIDNWtKDFVKRRGLKKGD 160
                      699*******************999976441....44456666666666744555543334444555*************557*********** PP

                      EEEEEE-SS.SEE..EEE CS
               B3  79 fvvFkldgr.sefelvvk 95 
                       + ++ d + ++f++ v+
  Lj0g3v0345959.1 161 EIKLHWDPNkNCFNFSVH 178
                      *****9866688877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-1666178IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-1768178No hitNo description
Gene3DG3DSA:2.40.330.101.1E-1370171IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-872178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MACVPESICV HLTLGACPCA KSIIACSSNN PVEDDDSREK QQHRRAEEIS HAAAVVESPE  60
LMLCDDPWKI KKKLTQSDLG YLSRLLIPKD LAEDLVLPVL TRDAQMQVYT ENGTKILIWD  120
VDTQSSHYLV FKLWNSSGSY VFIDNWTKDF VKRRGLKKGD EIKLHWDPNK NCFNFSVHYS  180
SN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0345959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202397.16e-57B3 domain-containing protein At2g33720
TrEMBLA0A4P1RND52e-54A0A4P1RND5_LUPAN; Uncharacterized protein
STRINGXP_007138390.14e-40(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-23B3 family protein