PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0349319.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 686aa    MW: 76686.5 Da    PI: 5.7374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0349319.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.82.9e-983356853374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L++ Ae +++g+   aq +Larl+++ sp+g+p++R+a+y++eAL++ l++      +  +  + s+ + + ++ a+k fse+sP+l+f+++
  Lj0g3v0349319.1 335 DQLYKTAELIEAGNPVHAQGILARLNHQLSPNGKPFHRAAFYMKEALQSMLHS------NGHNFLTFSPISFIFKIGAYKSFSEISPVLQFANF 422
                      689*************************************************9......34444445555599********************* PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      t+Nqa+ eave+ +r+HiiDfdi+ G+QW +++q+La  R++g psl++T+v+sp++ ++ el+ t+e+L++fA+ +++ fe nvl     +  
  Lj0g3v0349319.1 423 TCNQALIEAVERFDRIHIIDFDIGFGVQWSSFMQELAlMRSSGVPSLKVTAVVSPSTCDEMELNLTQENLSQFAKDINMCFELNVL-----SIE 511
                      *************************************999*********************************************7.....455 PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      +l+++++  +Ea+aVn+ ++    +    sl+   +++L++vk+l+Pkvvv +++++d+ + +F++ +++al++ysal+dsl+a    + +  +
  Lj0g3v0349319.1 512 SLNSFQFFDDEAIAVNMPVSCLANY---PSLS---PSILQFVKQLRPKVVVTMDRNCDRIDVPFATNVAHALQCYSALLDSLDAV-NVNLDILQ 598
                      5688899***********9655554...4444...59*********************************************665.34669999 PP

             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      k+Er+++ ++ ++ +   + +    he+l  Wr+++ + GF+p ++s+++++qa++l+++ +++g+++e ++ s+vl+W++++L+svS Wr
  Lj0g3v0349319.1 599 KIERHFILPDMKKTIFGHNHS----HEKLPPWRSMFLQYGFSPFTFSNFTESQAECLVQRAPVRGFQLERKHSSFVLCWQQKELISVSTWR 685
                      ***************999988....*****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.633307665IPR005202Transcription factor GRAS
PfamPF035141.0E-95335685IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MPLPFEGFQG QGGVLDFSAA SDSLFPLLLH PQKWTRDREN CYVGSTEPTS VLDSRRSPNH  60
STSSSTMSSS TTSKGSGGVA APTLSQNYPP WEEEKCGVPM EDWEGQGQSI LRLIMGDVEA  120
PSAGLSKLFH STGYGSHSVD FNGGFGVLDQ GLNMVSIVDP SVQGNYPGFS FIAENIDSHN  180
AESNFSGFGN NSLLSSSPGM FNSQQHQGIG EVDEKPQVIN PQFLLNQNQV QFPENPSFFV  240
PLRYPQVQEQ QVLSQNQAKR LPFDTVGHNY QAQVPKLPLL DSGQEVFVKR HQTQLPLFPH  300
HMQQQQSLMV PSAKQEKVDS TGDDVNNQLQ QSIFDQLYKT AELIEAGNPV HAQGILARLN  360
HQLSPNGKPF HRAAFYMKEA LQSMLHSNGH NFLTFSPISF IFKIGAYKSF SEISPVLQFA  420
NFTCNQALIE AVERFDRIHI IDFDIGFGVQ WSSFMQELAL MRSSGVPSLK VTAVVSPSTC  480
DEMELNLTQE NLSQFAKDIN MCFELNVLSI ESLNSFQFFD DEAIAVNMPV SCLANYPSLS  540
PSILQFVKQL RPKVVVTMDR NCDRIDVPFA TNVAHALQCY SALLDSLDAV NVNLDILQKI  600
ERHFILPDMK KTIFGHNHSH EKLPPWRSMF LQYGFSPFTF SNFTESQAEC LVQRAPVRGF  660
QLERKHSSFV LCWQQKELIS VSTWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2933968425378Protein SCARECROW
5b3h_A2e-2933968424377Protein SCARECROW
5b3h_D2e-2933968424377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.7183e-70root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0349319.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336463.10.0scarecrow-like protein 6 isoform X1
SwissprotO813161e-124SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0S3SXZ00.0A0A0S3SXZ0_PHAAN; Uncharacterized protein
STRINGGLYMA01G33270.10.0(Glycine max)
STRINGXP_007134753.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-113GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]