PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0351779.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YC
Protein Properties Length: 290aa    MW: 31904.2 Da    PI: 4.8451
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0351779.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.73.1e-196851897
            NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                     ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl div 
  Lj0g3v0351779.2  6 ETRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVS 85
                     5789*************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-26372IPR009072Histone-fold
SuperFamilySSF471131.62E-20490IPR009072Histone-fold
PfamPF008081.4E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRKKLETRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNALHLKHC VQSYNVFDFL RDIVSTVPDY GHGHGHGNSE GGADDRALPK RRKAAGDDGN  120
DSDEEAKRSK MLELGHTSST GKGRGRGRGR GRGRGRGART VEKETSVHQV ESEPCTSIPE  180
SSKDFPDTSV AMYNDPESKE LSKENIAVPE ENAQSLRNID LNANLNENED KGASTAAQAS  240
LPEPAETEIK HEEIPGWSLS DVDKMAIDNM QLANLGSRVE DDEEDYDEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145155RGRGRGRGRGR
2147156RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.13700.0cell culture| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0351779.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1444390.0BT144439.1 Lotus japonicus clone JCVI-FLLj-3O5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341408.11e-150dr1-associated corepressor-like isoform X3
TrEMBLI3SVE11e-176I3SVE1_LOTJA; Uncharacterized protein
STRINGGLYMA06G46850.11e-141(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-72nuclear factor Y, subunit C11