PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0353129.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 190aa    MW: 21598.9 Da    PI: 9.8507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0353129.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.41.3e-27201471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      l pG++F+Ptde lv++yLk+++ +++l++ ++i++++++++ePw Lp    +    +e++++f+ +  +    ++   r++ sg Wk   k k
  Lj0g3v0353129.1  20 LLPGYKFDPTDEVLVNFYLKRRAFAQPLPV-QIIPNFNVFQTEPWGLPgGdgN--IfNERKCFFYNTMGRDL--ESLDIRIAGSGQWKVVEKGK 108
                      579***************************.89***************53332..23678899999988876..46899999******666655 PP

              NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  + ++e++g k+tL+f++ +  +++ t+Wvmhe+rl
  Lj0g3v0353129.1 109 CIPIRqNNEVIGKKNTLIFWELQGASAKMTKWVMHEFRL 147
                      5544438899***********9999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-3417167IPR003441NAC domain
PROSITE profilePS5100534.01820167IPR003441NAC domain
PfamPF023651.9E-1522147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MTSFEMEALI TCDKDGSVRL LPGYKFDPTD EVLVNFYLKR RAFAQPLPVQ IIPNFNVFQT  60
EPWGLPGGDG NIFNERKCFF YNTMGRDLES LDIRIAGSGQ WKVVEKGKCI PIRQNNEVIG  120
KKNTLIFWEL QGASAKMTKW VMHEFRLVLV AKQSKISNWV VYRIFLEKDA QKVKSARGPN  180
GKSSSSGENA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-23131698170Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0353129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352865.13e-62NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-33NAC domain containing protein 83