PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0354159.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 83aa    MW: 9684.43 Da    PI: 9.574
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0354159.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.6e-153811798
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     ++p++f++e+ ++ ++  t++l+  + + W vkli   k+g+  l+kGW eF+   +L +gD +vF+l+++++  l v++fr
  Lj0g3v0354159.1  3 RVPNPFIREYFNDMQQ--TIMLQY-EKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDACVFELINKEDPVLDVHIFR 81
                     58********766434..677665.889******9977777778*************************9999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.323183IPR003340B3 DNA binding domain
SMARTSM010190.0018183IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-17281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-15381IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-13381No hitNo description
PfamPF023621.4E-13382IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MQRVPNPFIR EYFNDMQQTI MLQYEKKLWP VKLICYPKKG SGKLSKGWVE FAGKSKLVVG  60
DACVFELINK EDPVLDVHIF RGH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.49071e-138floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0354159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048964e-76AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019459711.12e-24PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_019459713.12e-24PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A2K3L3W73e-26A0A2K3L3W7_TRIPR; B3 domain-containing protein
STRINGAES628344e-21(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-14related to vernalization1 1