PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0356309.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 178aa    MW: 20211.9 Da    PI: 10.7141
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0356309.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-18125171148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Lj0g3v0356309.1 125 KGQWTDEEDRKLLKLVKQHGVRKWSQIAEKLE-GRAGKQCRERWHNHL 171
                      799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.409120175IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-24124174IPR009057Homeodomain-like
SMARTSM007176.0E-17124173IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-19125177IPR009057Homeodomain-like
CDDcd001672.12E-16128171No hitNo description
PfamPF139213.3E-17128176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKSIGGRGGG TASPSSMHRS GPPLTAIDRF LWGQNSHFTP KQQSQNIANN NHTAIANLDD  60
EFSTYRFMWP YPQEVSFIDK LLVNEEAMNW TQQIPTLKEN VQVLGKNSKG VGRRPKKGSS  120
VALIKGQWTD EEDRKLLKLV KQHGVRKWSQ IAEKLEGRAG KQCRERWHNH LRPDIKVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-19123176558B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0356309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027337468.13e-74transcription factor MYB119-like
TrEMBLA0A371EXC93e-70A0A371EXC9_MUCPR; Transcription factor MYB119 (Fragment)
TrEMBLA0A396IPF03e-73A0A396IPF0_MEDTR; Putative transcription factor MYB-HB-like family
STRINGXP_004500264.16e-65(Cicer arietinum)
STRINGXP_007146726.11e-64(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-33myb domain protein 119