PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0359549.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 194aa    MW: 20877.4 Da    PI: 8.8094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0359549.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1965115155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta +Aa a+++a+++++g
  Lj0g3v0359549.1  65 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFATAIGAALAYDEAARAMYG 115
                      56*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-1365115IPR001471AP2/ERF domain
CDDcd000181.23E-3265125No hitNo description
SMARTSM003802.5E-3766129IPR001471AP2/ERF domain
PROSITE profilePS5103221.79966123IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2166123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-3266124IPR001471AP2/ERF domain
PRINTSPR003679.9E-126778IPR001471AP2/ERF domain
PRINTSPR003679.9E-12105125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MHMLEKAENK GDGSKSLPKI LAKWKEYNAQ LDSSNDGDKP VRKVPAKGSK KGCMKGKGGP  60
ENSRCNYRGV RQRTWGKWVA EIREPNRGKR LWLGTFATAI GAALAYDEAA RAMYGSSARL  120
NFPNVAVSNF SEESLKDSSV ANDDSGSSMA AVLANTESKV SSNNSGVGTE EDVDMEPISL  180
SLSVKHMNGE DCGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1866123260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1866123563ATERF1
3gcc_A2e-1866123563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.44340.0pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0359549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477980.0BT147798.1 Lotus japonicus clone JCVI-FLLj-6D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019448029.12e-95PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotA2WL191e-49DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLI3T5001e-136I3T500_LOTJA; Uncharacterized protein
STRINGGLYMA12G32400.15e-88(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.12e-41DRE/CRT-binding protein 2B