PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0360709.1
Common NameLjRAP2.4
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 372aa    MW: 40944 Da    PI: 5.0455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0360709.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-20196245255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ +l+g
  Lj0g3v0360709.1 196 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDRAAYRLRG 245
                      59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-33195255No hitNo description
SuperFamilySSF541719.15E-23196253IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-32196254IPR001471AP2/ERF domain
PROSITE profilePS5103223.011196253IPR001471AP2/ERF domain
SMARTSM003803.2E-37196259IPR001471AP2/ERF domain
PRINTSPR003674.9E-11197208IPR001471AP2/ERF domain
PfamPF008471.1E-13197245IPR001471AP2/ERF domain
PRINTSPR003674.9E-11219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAASMDFYNS STTQLQSDPF SGGELMEVLE PFMKTSPSST PSQSSSSPFS NSFLPSSNST  60
STSSYPSSPS PSPSPYPFYQ NQPSSSFSSS SSSSSSSSFF TTQPNFYTDG CSSMMPYLFP  120
SGFSSSSQSQ NNYIGFEQEQ PSSVIGLNQL TPSQISQIQT QIHFQSQQNT SNSLSFLAPK  180
PVAMKQSGTP PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFETAE EAALAYDRAA  240
YRLRGDFARL NFPNLKDQGS CFGDYKPLHA SVDAKLDAIC ENLADLQKQG TKAEKGVKSS  300
KKGLKKQVQA EVENKVEASL SPVVTESENS DDSSPLSDLT FGDFSEPQWD ATTSEYLNLQ  360
KFPSYEIDWD SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23195253160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.10370.0cell culture| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0360709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786300.0AB378630.1 Lotus japonicus LjRAP2.4 mRNA for transcription factor AP2-EREBP, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575266.11e-160ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E47e-90RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLB3IX300.0B3IX30_LOTJA; Transcription factor AP2-EREBP
STRINGXP_004514265.11e-138(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-64related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S
    A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.
    Plant Physiol., 2008. 147(4): p. 2030-40
    [PMID:18567832]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]