PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0363549.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 189aa MW: 22613.9 Da PI: 10.6571

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0363549.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67	4.9e-21	28	117	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn YA+ GFs rk+k + +n++i++++fvC k+g+r++ + ++++r++ + r+gC+a+ +v+ + +++w+v+ ++ eHnH l+ Lj0g3v0363549.1 28 FYNMYARVKGFSARKDKLLRD-KNRQIIQQNFVCHKQGRRTNIFGDeRTRKREPMKDIRCGCRAECRVHIDCnSNRWYVKYFDDEHNHLLV 117 9***************999.6666**********9975553678899999********999889************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-19	28	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MGNVNFKILN GNNLKMYRFS SREVAFLFYN MYARVKGFSA RKDKLLRDKN RQIIQQNFVC 60 HKQGRRTNIF GDERTRKREP MKDIRCGCRA ECRVHIDCNS NRWYVKYFDD EHNHLLVRAN 120 HAGLLPRHRR MQDADIMHMN HMRRAQNGIR NIYGSFANQM GGYENVPFSI HAMYNEVDKQ 180 RKKELPDGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0363549.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-17	FAR1-related sequence 5