PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0364159.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 191aa    MW: 21886.6 Da    PI: 9.9967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0364159.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-165613597
                     EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     +++le ++gr+W+v++      + + l++GWk+F+ +n+Lk+gD++vF+l++r+  +l+v +f
  Lj0g3v0364159.1  5 DIRLERLDGRTWKVYY------SFFKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVLIF 61
                     79**************......6899*************************99***9999998 PP
2B332.91.1e-101101851896
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +p +f++e+ ++k+   +++    + + W v++iy    g   l+kGW  F+k+ +L  gD++vF+l++++e+++v+ v
  Lj0g3v0364159.1 110 VPISFIREYLNEKK---QIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEV 185
                      6999****954433...366667788*******9977777788************************977666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.719164IPR003340B3 DNA binding domain
SMARTSM010190.0068164IPR003340B3 DNA binding domain
CDDcd100178.90E-16262No hitNo description
Gene3DG3DSA:2.40.330.105.6E-14361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-15361IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-14462IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-1686189IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1687189IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-1292189No hitNo description
PROSITE profilePS5086310.34893191IPR003340B3 DNA binding domain
SMARTSM010192.1E-594191IPR003340B3 DNA binding domain
PfamPF023622.5E-9110185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKKGDIRLER LDGRTWKVYY SFFKLGGGWK KFATDNNLKV GDICVFELTK REPLSLKVLI  60
FPVAQGGVPS SLGPHFTNAA QREARKYTPK NPSFTVSLNP VIKPAYRPPV PISFIREYLN  120
EKKQIINLKI EEKLWPVEFI YYPEFGLGKL SKGWIIFAKE SKLVGGDVCV FELINKDEEN  180
PVLEVHIFKG H
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0364159.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048961e-112AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
GenBankAP0103091e-112AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1722223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-13related to vernalization1 1