PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0364169.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 113aa    MW: 13414.7 Da    PI: 9.8648
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0364169.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-1150111772
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                      +   l+ g l+lp+ f+++++g   +   + l+ +++ sWe+    +k+++ ++++kGWkeFvk  
  Lj0g3v0364169.1  50 TLPCLEAGELILPNGFMKKYSGGMSN--PVFLKAPDNTSWEIHW--SKHDSYFWFQKGWKEFVKYY 111
                      667788899***********666445..5***************..*****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-1342113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-1142113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.99644113IPR003340B3 DNA binding domain
PfamPF023623.0E-950109IPR003340B3 DNA binding domain
CDDcd100171.53E-859113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MVWHLVLFEF KGPSKFEVRI FDKNALEIKY LPLSNKQIPN SATRFFRIIT LPCLEAGELI  60
LPNGFMKKYS GGMSNPVFLK APDNTSWEIH WSKHDSYFWF QKGWKEFVKY YSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0364169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048969e-78AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
GenBankAP0103099e-78AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019459425.12e-22PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_019459426.12e-22PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
RefseqXP_019459427.12e-22PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3
TrEMBLA0A371FB956e-23A0A371FB95_MUCPR; B3 domain-containing transcription factor VRN1 (Fragment)
STRINGGLYMA09G18790.26e-20(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-10B3 family protein