PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v0051030.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 107aa MW: 11306.8 Da PI: 7.5143

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v0051030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38.3	3.8e-12	2	53	44	95
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 ++l+++p+++ + +++sl+yeA r+ +Pv Gavg++++++++l+ql ++ + Lj1g3v0051030.1 2 SFLSSVPTNQTPGLFRSLLYEAVGRVVNPVTGAVGLLWTGNWHLCQLGVDQV 53 68999*****************************************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.862	1	59	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-9	2	50	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MSFLSSVPTN QTPGLFRSLL YEAVGRVVNP VTGAVGLLWT GNWHLCQLGV DQVLRSGAAA 60 AAAFTPPPQL PSLEAAATSS CHQQPPQIPS HQSTFPATST NPFTLFF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v0051030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146980	1e-156	BT146980.1 Lotus japonicus clone JCVI-FLLj-3A20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555291.1	7e-33	LOB domain-containing protein 38
Refseq	XP_028219492.1	7e-33	LOB domain-containing protein 38-like
Swissprot	Q9SN23	9e-23	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	I3T2N2	6e-60	I3T2N2_LOTJA; Uncharacterized protein
STRING	GLYMA20G26910.1	3e-32	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-25	LOB domain-containing protein 38