PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0162460.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 182aa    MW: 21383.7 Da    PI: 10.0954
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0162460.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.91.9e-191296289
             FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                     f+ +Y+k+vGF vr+++ +++ ++g++ + +fvC ke  r+ +k+   k  ++r+etrt+C+ +l +k++ dgk +v+++ +eHnH l
  Lj1g3v0162460.1 12 FWLNYGKKVGFGVRREYCHTK-KDGSVSSCRFVCCKEDVRKVDKQY-YKIVNPRPETRTNCQVRLGLKQK-DGKLVVHDFLEEHNHIL 96
                     999*************98886.8999****************9999.9********************99.***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-141296IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVFDSREDAW MFWLNYGKKV GFGVRREYCH TKKDGSVSSC RFVCCKEDVR KVDKQYYKIV  60
NPRPETRTNC QVRLGLKQKD GKLVVHDFLE EHNHILHLQE TSHMLPSQRK VLEVQSHQIE  120
LADDAGLQQK KSFELMSKQV GGRSNLGYTR LDQKNYLRKK KAKKFVTWGS WLYIAILSEK  180
VS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0162460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064030.0AP006403.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT16P18, TM0289, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630686.12e-75protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A151QXA26e-83A0A151QXA2_CAJCA; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A151RX655e-79A0A151RX65_CAJCA; Protein FAR1-RELATED SEQUENCE 5
STRINGAES877111e-67(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-21FAR1-related sequence 5