PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0175780.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25539.1 Da    PI: 9.786
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0175780.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.6e-281059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstg+lye++s
  Lj1g3v0175780.2 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGRLYEFAS 59
                     8***********************************************86 PP
2K-box80.15.2e-2778169897
            K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +   ++++ + +q+e+a L+++++ Lq+++R+++Ge+L+ L++keLq+Le+qLe sl  +R kK++ll+++i+el +k + +++en +L kk
  Lj1g3v0175780.2  78 QlgSSTSEIKLWQREAAMLRQQLHCLQESHRQIMGEELSGLTVKELQSLESQLEISLHGVRMKKDQLLMDEIQELNRKGNLIHQENVELYKK 169
                      2347889999******************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.763161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-32285IPR002100Transcription factor, MADS-box
CDDcd002653.82E-44276No hitNo description
PRINTSPR004042.7E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.5E-2683169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.38286177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVVIFSS TGRLYEFASS  60
SMKSVIDRYN KSKEEQNQLG SSTSEIKLWQ REAAMLRQQL HCLQESHRQI MGEELSGLTV  120
KELQSLESQL EISLHGVRMK KDQLLMDEIQ ELNRKGNLIH QENVELYKKG YRTKDWNVPN  180
SNSVLTSGQS TGEDLQVPVN LQLSQPQPQQ YLSPSGTTKL GLQLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20174174MEF2C
5f28_B3e-20174174MEF2C
5f28_C3e-20174174MEF2C
5f28_D3e-20174174MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.232650.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0175780.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1447570.0BT144757.1 Lotus japonicus clone JCVI-FLLj-15G19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200204.11e-135MADS-box transcription factor 23-like isoform X5
SwissprotQ6EP496e-97MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLI3SWA91e-150I3SWA9_LOTJA; Uncharacterized protein
STRINGGLYMA14G36221.21e-132(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-83AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]