PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0318230.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 178aa    MW: 19819.5 Da    PI: 4.6199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0318230.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.1e-142441055
              AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++aa++ ++g
  Lj1g3v0318230.1  2 RNWGKWVSEIREPRK---KSRIWLGTFSNPEMAARAHDAAALTIKG 44
                     57**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-26153IPR001471AP2/ERF domain
CDDcd000183.43E-16154No hitNo description
PROSITE profilePS5103219.216152IPR001471AP2/ERF domain
SMARTSM003804.5E-27158IPR001471AP2/ERF domain
PfamPF008472.0E-8244IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRNWGKWVSE IREPRKKSRI WLGTFSNPEM AARAHDAAAL TIKGTSAILN FPHLAASLPR  60
PASLAPRDVQ AAAAKAAQME LPLPLPLPST EELSAAASTV ELSEIIELPR LETSYELVGE  120
EFVQLMDSHD DAWMYQQPPP LMPPWLHCDA GSSDHDHQFS VPESSEVIST FETLMWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-142532173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0318230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092530.0AP009253.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT40A22, TM1858, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237808.29e-61AP2 domain transcription factor TINY
RefseqXP_028199679.19e-61ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD39e-44DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445H5I62e-59A0A445H5I6_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLI1MA082e-59I1MA08_SOYBN; Uncharacterized protein
STRINGGLYMA14G22740.14e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]