PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0409040.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 343aa    MW: 37690.9 Da    PI: 7.0958
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0409040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.15.3e-4053112362
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ++alkcprCds++tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  Lj1g3v0409040.1  53 DQALKCPRCDSAHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 112
                      7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-2553106IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3353110IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.07856110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGLSSLHVCM DTAEHWLQGT IHDESGMDSS SPSGDMLTCS RPMMERRLRP PLDQALKCPR  60
CDSAHTKFCY YNNYSLSQPR YFCKTCRRYW TKGGTLRNIP VGGGCRKNKK VSNKKSNDPH  120
LSNNNQNQSQ PGVPSYHHHN PKDLQLSFPA DVQFSHLSNL LGANAGALGN PNFMESKYGN  180
IGMLDNPRPI DFMESKLEGI IGSSGSRNFD FFGNSHHDMG MAVGLGDHHM SGTQNGMPPN  240
FHGLCSPSFG GMSFDGVGSH NNNNGAYLMD SCQRLMLPYD HANDQDHNEA SIDVKPNPRL  300
LSLEWQDQGC SDAGKESYGY LNGPGSWTGG MMNGYGSSTN PLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0409040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338963.10.0dof zinc finger protein DOF5.6-like
TrEMBLA0A371EJ530.0A0A371EJ53_MUCPR; Dof zinc finger protein DOF5.6
STRINGXP_007138074.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.13e-43Dof family protein