PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v0426840.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 253aa MW: 27091.9 Da PI: 6.4019

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v0426840.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.9	2.8e-11	134	181	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Lj1g3v0426840.1 134 SHSIAERARREKISERMKILQDLVPGC----NKMIGKALVLDEIINYIQSLQ 181 8***********************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.20E-11	128	185	No hit	No description
SuperFamily	SSF47459	1.26E-17	128	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-18	130	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.758	130	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	134	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-10	136	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDPPLINDST FSSAFALAEI WPRPGGGADE HSTVTQLTAA ARNHGSRIKM KNNNDSTTSE 60 DDCSKNDSGN KRIRLGGGGS TVENGGGGGL KAAEASSVAG SNNSDEQSTK PSESEPPKQD 120 YIHVRARRGQ ATDSHSIAER ARREKISERM KILQDLVPGC NKMIGKALVL DEIINYIQSL 180 QHQVEFLSMK LEAVNSRANL NPTNEGFPSK DVVTQPFDIA GVIYESQAAR GYAQGSHPGW 240 LHMQIGGGFE GAT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5742	0.0	flower\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v0426840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT140195	0.0	BT140195.1 Lotus japonicus clone JCVI-FLLj-16L8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527048.1	1e-113	transcription factor bHLH79
Swissprot	Q9LV17	2e-73	BH079_ARATH; Transcription factor bHLH79
TrEMBL	I3SI98	1e-164	I3SI98_LOTJA; Uncharacterized protein
STRING	GLYMA06G20000.1	1e-112	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]