PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v0513130.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 525aa MW: 58187.4 Da PI: 6.4522

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v0513130.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.5e-38	173	233	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++r vPvG+grrknk+ss Lj1g3v0513130.1 173 PDKLLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRHVPVGAGRRKNKNSS 233 78999*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.8E-32	175	231	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.164	177	231	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	179	215	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-20	184	230	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MLPLPTETKN PNKTETLKTR SLAVIFRISR NRLPRFPQPS PRFPRTLFGS RENAGNEGSC 60 HQAFRPEDSL YPSTAAAIDV DKEEEEEDDV DRSEPEIDKV DQGDKDPPAE KVTEKKKEAD 120 PPPNTVAETK DIQNPKTPPI DEETANSETG KSENDQNDEN NNINSDDKTL KKPDKLLPCP 180 RCKSMDTKFC YYNNYNVNQP RYFCKACQRY WTAGGTMRHV PVGAGRRKNK NSSSHYDHIT 240 VSEARQAARI GAANGTHHAL KSNGRVLSFG IDPPICDSVA SVLNLGDSKK ALSGTRNRFH 300 NHTSEEQKIP VSGENGEDCS SSITVSNSME ETGKSTIQET FLPNNGFVPQ QVQCFSSVPW 360 PYPWGSGVPS QPQPALCPPG FFYPAAPMWN WSVPWFSSHT SAPNQMSPSS GSNSPTLGKH 420 SRNDDDMVKE QDLQQQEEES SQRHRNGCVL VPKTLRIDDP DEAAKSSIWA TLGIKNECVN 480 VSGGGMFKAF QSKKKEEKNH VLETSSVLLA NPAALSRSLN FHENT

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MLPLPTETKN PNKTETLKTR SLAVIFRISR NRLPRFPQPS PRFPRTLFGS RENAGNEGSC  60
HQAFRPEDSL YPSTAAAIDV DKEEEEEDDV DRSEPEIDKV DQGDKDPPAE KVTEKKKEAD  120
PPPNTVAETK DIQNPKTPPI DEETANSETG KSENDQNDEN NNINSDDKTL KKPDKLLPCP  180
RCKSMDTKFC YYNNYNVNQP RYFCKACQRY WTAGGTMRHV PVGAGRRKNK NSSSHYDHIT  240
VSEARQAARI GAANGTHHAL KSNGRVLSFG IDPPICDSVA SVLNLGDSKK ALSGTRNRFH  300
NHTSEEQKIP VSGENGEDCS SSITVSNSME ETGKSTIQET FLPNNGFVPQ QVQCFSSVPW  360
PYPWGSGVPS QPQPALCPPG FFYPAAPMWN WSVPWFSSHT SAPNQMSPSS GSNSPTLGKH  420
SRNDDDMVKE QDLQQQEEES SQRHRNGCVL VPKTLRIDDP DEAAKSSIWA TLGIKNECVN  480
VSGGGMFKAF QSKKKEEKNH VLETSSVLLA NPAALSRSLN FHENT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.22108	0.0	protoplast

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v0513130.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027334746.1	0.0	cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-110	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A1S3TR26	1e-180	A0A1S3TR26_VIGRR; cyclic dof factor 3
STRING	GLYMA06G20950.1	1e-177	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-95	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]