PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0705290.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19798.6 Da    PI: 5.7545
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0705290.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161360249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +i n+ n qv+f kRr+ ++KKA+ L++L ++e a+i++s++++++ +
  Lj1g3v0705290.1 13 KITNENNLQVSFFKRRQALFKKASKLCTLYGVEMAIIVLSPSQNFFSF 60
                     799****************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-13463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.699464IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-8626IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-19978IPR002100Transcription factor, MADS-box
PfamPF003194.5E-181360IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-82641IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-84162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSNSGEQSRD LEKITNENNL QVSFFKRRQA LFKKASKLCT LYGVEMAIIV LSPSQNFFSF  60
GHPSVEDVIE RYLPQDLPQP AQTMLCIEAP RNVNVGELNA QLSRFNNKFD SEMKKNEELN  120
RLHKVALTQI SGAGQIEDMD MPQLEHFKAA LEELRRKIRC YYDGIVDEGV VTGA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0705290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096380.0AP009638.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB17A22, BM1966, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941650.12e-49agamous-like MADS-box protein AGL62
RefseqXP_020233169.11e-49agamous-like MADS-box protein AGL62
STRINGXP_004496799.12e-47(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-32AGAMOUS-like 62