PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0748030.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 486aa    MW: 53198.5 Da    PI: 8.8664
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0748030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-19511133599
                      EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       l+++d +g  We+++iyr++++r++lt+GW++Fv++++L +gD+vvF+  ++ ++e++v+++r+
  Lj1g3v0748030.1  51 NLIITDVHGVAWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFM--KNPRGEMFVGLRRA 113
                      58999********************************************..779********997 PP
2Auxin_resp99.25.5e-33167250183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a++ ++FevvY+P+a++s+Fvvk+e ve+a++v++s+GmR+kma+et+dss+ ++ +G+v++vs +d+  Wp+S+Wr+L+
  Lj1g3v0748030.1 167 AMELAAQDMPFEVVYYPKAGWSDFVVKAEAVEEAIRVRWSPGMRVKMAVETDDSSRLTWfQGMVSSVSFSDNAPWPRSPWRMLQ 250
                      578899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.4E-75114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-2238115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-1739130IPR015300DNA-binding pseudobarrel domain
CDDcd100177.77E-1450108No hitNo description
PfamPF023621.1E-1651113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.85752114IPR003340B3 DNA binding domain
PfamPF065075.4E-29167250IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLTTAVASLC RGSALIQSSR RLTTRRARPR GSAANPSSPA LAPRAAPPVQ NLIITDVHGV  60
AWEFRHIYRG TPRRHLLTTG WSKFVNSKKL VAGDSVVFMK NPRGEMFVGL RRASRFAGGG  120
DGARRSFPIG VVRSRVEEEE PPQEERSKEG FSRNGKGKLS PKSVAEAMEL AAQDMPFEVV  180
YYPKAGWSDF VVKAEAVEEA IRVRWSPGMR VKMAVETDDS SRLTWFQGMV SSVSFSDNAP  240
WPRSPWRMLQ ITWDEPEVLQ TSKWVSPWQV EQVSTTPGLH TVFPPTKRFK AAQGSGMFAD  300
GEGDPFSMTR FTNSTMGHLN QTLLNYGIFP AGMQGARHDL FSSSSFSNFP SDNSHLYMGN  360
SFGSNTVPRL HALSTELNVG SSQSGDLSPD SHSSLHSLGT DSVRNQNSNS AKPGSFSFQL  420
FGAIIHTKQP DESGSQGTGC TGDDSSKGNE TEGIDNPLDD SLTYSKLLDR LDSQCQRAST  480
VEACYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-3733271179388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.139650.0cell culture| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0748030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601137.10.0auxin response factor 17
TrEMBLA0A2Z6P2J00.0A0A2Z6P2J0_TRISU; Auxin response factor
STRINGAES713880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-101auxin response factor 17