PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0752220.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 400aa    MW: 44848.4 Da    PI: 9.2305
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0752220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24146247199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+ltpsd+++ g +++p+ +a+++         ++ +   l+++d +g  We+++iyr++++r++lt+GW++Fv++++L +gD+vvF+  ++
  Lj1g3v0752220.1 146 FAKILTPSDANNGGGFSVPRFCADSIfpaldyqADPPVQ--NLIITDVHGVAWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFM--KN 235
                      89*********************999****996555555..6999*********************************************..77 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       ++e++v+++r+
  Lj1g3v0752220.1 236 PRGEMFVGLRRA 247
                      9********997 PP
2Auxin_resp99.74e-33301384183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a++ ++FevvY+P+a++s+Fvvk+e ve+a++v++s+GmR+kma+et+dss+ ++ +G+v++vs +d+  Wp+S+Wr+L+
  Lj1g3v0752220.1 301 AMELAAQDMPFEVVYYPKAGWSDFVVKAEAVEEAIRVRWSPGMRVKMAVETDDSSRLTWfQGMVSSVSFSDNAPWPRSPWRMLQ 384
                      578899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-34141249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29142264IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-20145242No hitNo description
PROSITE profilePS5086313.098146248IPR003340B3 DNA binding domain
SMARTSM010193.6E-18146248IPR003340B3 DNA binding domain
PfamPF023622.5E-22146247IPR003340B3 DNA binding domain
PfamPF065073.9E-29301384IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MFENQNPKPF IHSHSLVTIS ESCEARFIHS IMPRQLPPPP PVPNRRLDPK IWRACAGAAV  60
QIPTLNSRVY YFPQGHMDQA SSPPQHLSHR LVSRPMILCR VTAVQFLADH LTDEVFAKLV  120
LHPVTESPQR FPLPSEDDGG EKVVSFAKIL TPSDANNGGG FSVPRFCADS IFPALDYQAD  180
PPVQNLIITD VHGVAWEFRH IYRGTPRRHL LTTGWSKFVN SKKLVAGDSV VFMKNPRGEM  240
FVGLRRASRF AGGGDGARRS FPIGVVRSRV EEEEPPQEER SKEGFSRNGK GKLSPKSVAE  300
AMELAAQDMP FEVVYYPKAG WSDFVVKAEA VEEAIRVRWS PGMRVKMAVE TDDSSRLTWF  360
QGMVSSVSFS DNAPWPRSPW RMLQVFLCFI ISSSLRFALC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-624738551368Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.139650.0cell culture| protoplast
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0752220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567350.11e-171auxin response factor 17
SwissprotQ84WU61e-128ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1S3DV831e-170A0A1S3DV83_CICAR; Auxin response factor
STRINGXP_004515659.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-125auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]