PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1037350.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 240aa    MW: 28008 Da    PI: 4.9661
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1037350.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37e-203991456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++f++eq++ Le  Fe+++++  +++ +LAk lgL+ rqV +WFqNrRa++k
  Lj1g3v1037350.1 39 KRRFSDEQIRSLECIFESESKLEPRKKIQLAKDLGLQPRQVAIWFQNRRARWK 91
                     568*************************************************9 PP
2HD-ZIP_I/II120.58.7e-3937129193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+s+eq+++LE  Fe+e+kLep++K +la++Lglqprqva+WFqnrRAR+k+k++Ek+y++Lk++yd+l+++ e+L++e+e+L+ el++
  Lj1g3v1037350.1  37 ENKRRFSDEQIRSLECIFESESKLEPRKKIQLAKDLGLQPRQVAIWFQNRRARWKSKRMEKEYRKLKDEYDNLASRFESLKEEKESLQLELQK 129
                      58**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-182193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-192292IPR009057Homeodomain-like
SMARTSM003895.9E-163097IPR001356Homeobox domain
PROSITE profilePS5007117.5893393IPR001356Homeobox domain
PfamPF000462.9E-173991IPR001356Homeobox domain
CDDcd000861.66E-143994No hitNo description
PRINTSPR000311.1E-56473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000311.1E-57389IPR000047Helix-turn-helix motif
PfamPF021833.0E-1193133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMEEDENIQA SIGENVESFT CSLEPPQNSR KKNRKVENKR RFSDEQIRSL ECIFESESKL  60
EPRKKIQLAK DLGLQPRQVA IWFQNRRARW KSKRMEKEYR KLKDEYDNLA SRFESLKEEK  120
ESLQLELQKL SYLMETSHDG GKVGKENSTE DGGSGSGYSN CRGEGKVRFS NEGLEDRVGV  180
YSDDQNEISK RAEKPDQLLR MDDDHDAETP FTSLEKWYRV DPSGILDQAC NSSQWLDFWT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1037350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1350280.0BT135028.1 Lotus japonicus clone JCVI-FLLj-7F24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027902455.11e-117homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2K3N8461e-121A0A2K3N846_TRIPR; Homeobox-leucine zipper protein ATHB-7-like
STRINGXP_007136490.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-38homeobox 7