PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1222700.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 326aa    MW: 35273.5 Da    PI: 9.8196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1222700.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20141190255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g
  Lj1g3v1222700.1 141 KYRGVRQRP-WGKWAAEIRDpF-----KaTRVWLGTFETAEAAARAYDEAALRFRG 190
                      8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-33140199IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23141199IPR016177DNA-binding domain
CDDcd000181.10E-21141200No hitNo description
PROSITE profilePS5103225.554141198IPR001471AP2/ERF domain
PfamPF008474.7E-14141190IPR001471AP2/ERF domain
SMARTSM003808.4E-37141204IPR001471AP2/ERF domain
PRINTSPR003676.6E-12142153IPR001471AP2/ERF domain
PRINTSPR003676.6E-12164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMFPGLNRER EMSAMVSALT HVVSGDVPSG DYTIRHDFGG GSVRQNLPSY SSATPSLPSS  60
SDYVASSSLK RSREDDRSSF IEFSHGASSP ALPASTFTES SSNRSSSSNT TRVTGEIGNA  120
VYEYRATPTE NVAREDQGRR KYRGVRQRPW GKWAAEIRDP FKATRVWLGT FETAEAAARA  180
YDEAALRFRG NKAKLNFPEN VTLRQQLPAT QWGGNTVVSI PTSTDPIVHT EALPHSQPLS  240
NLYFFPQRSL YDNQNQNIMT TTSTRASHLQ SSSSPPPPRA SSSSSSSASS AFGSSVASTQ  300
ATSFSSLYSN QLQPWSASGH SSSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-23140201466ATERF1
3gcc_A7e-23140201466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.215340.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1222700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4140010.0KC414001.1 Lotus corniculatus AP2/ERF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339139.12e-93ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0U1UPU30.0A0A0U1UPU3_LOTCO; AP2/ERF
STRINGAES727651e-79(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-26related to AP2 6