PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1255850.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 261aa    MW: 30556.6 Da    PI: 9.698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1255850.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.5e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W++++r  g++R +k+c++rw +yl
  Lj1g3v1255850.1 22 KGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding52.79.8e-1775119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Lj1g3v1255850.1  75 RGQITPQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.371769IPR017930Myb domain
SuperFamilySSF466896.64E-3021116IPR009057Homeodomain-like
SMARTSM007179.5E-172171IPR001005SANT/Myb domain
PfamPF002491.5E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-232376IPR009057Homeodomain-like
CDDcd001678.77E-122469No hitNo description
PROSITE profilePS5129424.92870124IPR017930Myb domain
SMARTSM007175.8E-1574122IPR001005SANT/Myb domain
PfamPF002491.5E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2477123IPR009057Homeodomain-like
CDDcd001674.58E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MYWGGVMTGH MGRGFTEELW RKGPWTAEED RLLIEYVRLH GEGRWNSVSR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP QEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKSPSDA AEKARNRLLR KQQFHQQQQQ QQQQLLQQQQ MQQQQQQQQQ MQFNLDLKGI  180
MALLEENNSQ RVPYISQAIR QDMVNMCPNT TEEQGYLYSS AVPEASAEEI LWDGLWNMDE  240
AHGNLSVANK AGLYNLVAPF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-272212427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1255850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535980.11e-138transcription factor MYB2 isoform X1
TrEMBLA0A0R0HSY11e-136A0A0R0HSY1_SOYBN; Uncharacterized protein
STRINGGLYMA10G26681.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-84myb domain protein 305