PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1265910.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 507aa    MW: 57341.8 Da    PI: 6.2265
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1265910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.91.5e-2953139187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e++aL+++r+em+ ++r+++ k+plWe+vs+k++e g++rs+k+C+ek+en+ k+++++keg+ +r+++s +t+++f+qlea
  Lj1g3v1265910.1  53 RWPREETMALLRIRSEMDVAFRDTSPKAPLWEQVSRKLAELGYHRSAKKCREKFENIYKYHRRTKEGRFGRANNSGKTYRFFEQLEA 139
                      8************************************************************************************85 PP
2trihelix97.51.2e-30341430187
         trihelix   1 rWtkqevlaLiearremeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k+ev aLi++r++++ +++     +++k+plWee+s++m++ g+ rs+k+Ckekwen+nk++k++ke +k++ +++s+tcpy+++lea
  Lj1g3v1265910.1 341 RWPKEEVEALIRLRTQLDVQSQGnnngSNSKGPLWEEISSAMKSIGYDRSAKRCKEKWENINKYFKRMKEKNKRK-PTDSKTCPYYHHLEA 430
                      8**************99988885223357********************************************96.99**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-450112IPR001005SANT/Myb domain
PfamPF138372.6E-1952140No hitNo description
CDDcd122035.44E-2452117No hitNo description
PROSITE profilePS500907.39952110IPR017877Myb-like domain
SMARTSM007172.2E-6338404IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-5339401IPR009057Homeodomain-like
SuperFamilySSF466893.23E-5339419IPR009057Homeodomain-like
PROSITE profilePS500907.863340402IPR017877Myb-like domain
PfamPF138376.5E-22340431No hitNo description
CDDcd122036.72E-24340409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLGISSLPET PIQTPPPHLV QEVAAAATDG GPLSDGFKTE HGEDGDRSSG ANRWPREETM  60
ALLRIRSEMD VAFRDTSPKA PLWEQVSRKL AELGYHRSAK KCREKFENIY KYHRRTKEGR  120
FGRANNSGKT YRFFEQLEAL EGNLVHPPSS SEGQQHHVQL QPDSNVDVIQ DAVPCSFRFP  180
GANVVEYSSS ATCSSGEGGE KGKKKRKLTR FFEGLMREVI ERQETLQRKF MEVLDKCEME  240
RVAREEAWKV EELARIQRER EVLAQERAIS AAKDEAVLAL LKKITENSAD GTVQLPEKFY  300
VIPDENANGN VNGEGEKQHQ EGGNANVGVN VGSFIHMSSS RWPKEEVEAL IRLRTQLDVQ  360
SQGNNNGSNS KGPLWEEISS AMKSIGYDRS AKRCKEKWEN INKYFKRMKE KNKRKPTDSK  420
TCPYYHHLEA LYSKKPKKVD DSGSSGNELK PEELLMHIMG SHGERQQLES SSEDGDRENM  480
EQNQGDNDED QDEYQMVDNS PSTGIMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1265910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217532e-66EF221753.1 Glycine max trihelix transcription factor (GT-2A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364418.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-109TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLV7AVU40.0V7AVU4_PHAVU; Uncharacterized protein
STRINGXP_007137690.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-105Trihelix family protein