PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v1301650.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C3H

Protein Properties

Length: 871aa MW: 96542.3 Da PI: 9.4709

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1301650.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8.1e-07	156	176	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa GtC++G+ C+F H Lj1g3v1301650.1 156 PCRDFAS-GTCRRGSLCNFLHH 176 8****.***********6 PP
2	zf-CCCH	19.1	2.4e-06	215	236	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H Lj1g3v1301650.1 215 EACINFAK-GRCRQGSSCKFVHH 236 68****.***********5 PP
3	zf-CCCH	17.5	7.3e-06	311	331	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa G C+ G C+F+H+ Lj1g3v1301650.1 311 PCKFFAN-GNCRNGKYCRFSHD 331 78888.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.314	151	178	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.9E-4	153	177	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-5	155	176	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-5	155	177	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.54	211	238	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.11	212	237	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	0.001	215	236	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-4	306	332	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.366	306	333	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.8E-6	309	331	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-4	311	336	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MSEGGRKRSS KWDLIDEPEF APGSKQMRSG RSSADVAGSN SSKWSYSEGN DELKPGKGRS 60 SKDSFSGGRD SNKDNIMNKD YRVSDATMDL DTDRSYSKNM SPLFEERRQN RRSQSPKSGW 120 GRSVRRSRSR SPPHGFRRDS GINDRIRTRV GGSSQPCRDF ASGTCRRGSL CNFLHHDNQN 180 PENSWESKHR EDGAPRYSDT HESRDHSFRS GRANEACINF AKGRCRQGSS CKFVHHNNSD 240 GYGKVSGDEL TREKEIDKRR GDSSFEQGGR HGYGKVSVDE LTREKEIDKR RGDSSFEQGG 300 RHGPNRSSDI PCKFFANGNC RNGKYCRFSH DRQACRSPDR RSRDDRWASN PSGDHQMFDR 360 PKMSDTASPN RRLRDDRWGS DGNTADADKV RDSLKRNDAV ATSDRAKLIE HKTGNVGVTD 420 PKFTDWPTGD AWGHSLDKSR VLGEPPFLDD KKEADHWVAE NTGANMHSSQ SIGTDIWSDE 480 GKMSPDWNYR LGPSSHIEEY GQNRHGITQG GTYLATSEHD RVQVAPGQGF NQNSLHSSSG 540 YTIGQSQVAV PILPSRGGIL DGTHNHEVST EKKYLAEPSI MDGGLSQVIS TPTQNMVSKE 600 QIAQLTNLSA SLAHILGTGQ QLPQLYAALN SHDLKDTPSL AKTEVPSMPV SNTSINPDPA 660 VGLPQQYDPT SDSIEPNADA KKVSAAIPAT KRIAEPAAEI PSQLPDSGRQ SRGDSIKPAS 720 SELVKSDKII QLQPGKNFDV NKDKSGVLAA ERRRNSRDAH KNTKEDGPLD NMDQPGGPDE 780 AKKTKDVKEL RAFKFSLADL VKELLKPAWK EGQVNKEDFK TIVKKVVEKV SGTMQGSQIP 840 QTKEKIDQYL SVSRTKLTKL VQAYVEKVQK A

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MSEGGRKRSS KWDLIDEPEF APGSKQMRSG RSSADVAGSN SSKWSYSEGN DELKPGKGRS  60
SKDSFSGGRD SNKDNIMNKD YRVSDATMDL DTDRSYSKNM SPLFEERRQN RRSQSPKSGW  120
GRSVRRSRSR SPPHGFRRDS GINDRIRTRV GGSSQPCRDF ASGTCRRGSL CNFLHHDNQN  180
PENSWESKHR EDGAPRYSDT HESRDHSFRS GRANEACINF AKGRCRQGSS CKFVHHNNSD  240
GYGKVSGDEL TREKEIDKRR GDSSFEQGGR HGYGKVSVDE LTREKEIDKR RGDSSFEQGG  300
RHGPNRSSDI PCKFFANGNC RNGKYCRFSH DRQACRSPDR RSRDDRWASN PSGDHQMFDR  360
PKMSDTASPN RRLRDDRWGS DGNTADADKV RDSLKRNDAV ATSDRAKLIE HKTGNVGVTD  420
PKFTDWPTGD AWGHSLDKSR VLGEPPFLDD KKEADHWVAE NTGANMHSSQ SIGTDIWSDE  480
GKMSPDWNYR LGPSSHIEEY GQNRHGITQG GTYLATSEHD RVQVAPGQGF NQNSLHSSSG  540
YTIGQSQVAV PILPSRGGIL DGTHNHEVST EKKYLAEPSI MDGGLSQVIS TPTQNMVSKE  600
QIAQLTNLSA SLAHILGTGQ QLPQLYAALN SHDLKDTPSL AKTEVPSMPV SNTSINPDPA  660
VGLPQQYDPT SDSIEPNADA KKVSAAIPAT KRIAEPAAEI PSQLPDSGRQ SRGDSIKPAS  720
SELVKSDKII QLQPGKNFDV NKDKSGVLAA ERRRNSRDAH KNTKEDGPLD NMDQPGGPDE  780
AKKTKDVKEL RAFKFSLADL VKELLKPAWK EGQVNKEDFK TIVKKVVEKV SGTMQGSQIP  840
QTKEKIDQYL SVSRTKLTKL VQAYVEKVQK A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1301650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143916	0.0	BT143916.1 Lotus japonicus clone JCVI-FLLj-24I8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027368948.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X4
TrEMBL	A0A371GLE0	0.0	A0A371GLE0_MUCPR; Zinc finger CCCH domain-containing protein 38 (Fragment)
STRING	XP_004502920.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-17	C3H family protein