PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v1304790.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 344aa MW: 38503 Da PI: 4.4789

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1304790.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.9	1.5e-47	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l pGfrFhPtd el++++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k +k+++ +wyfF++r ky+tg + nrat+ gyWk+tgkd++v Lj1g3v1304790.1 6 LIPGFRFHPTDVELIMYFLKRKILGRKFPF-DVIAELDIYKYAPWDLPdKsVLKTGDLKWYFFCPRGMKYSTGGKLNRATEFGYWKTTGKDRSV 98 579*************************.99**********96446677888********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k+++vg+ +tLvf+ grapkg +tdWvmhe+r+ Lj1g3v1304790.1 99 EH-KNQVVGMIRTLVFHIGRAPKGDRTDWVMHEFRI 133 9.999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-58	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	53.625	6	156	IPR003441	NAC domain
Pfam	PF02365	3.4E-24	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MADTKLIPGF RFHPTDVELI MYFLKRKILG RKFPFDVIAE LDIYKYAPWD LPDKSVLKTG 60 DLKWYFFCPR GMKYSTGGKL NRATEFGYWK TTGKDRSVEH KNQVVGMIRT LVFHIGRAPK 120 GDRTDWVMHE FRIEHKDLAD KGIPQDSYVI CRVFQKEGPG PRNGAQYGKP FNEEDWDEDE 180 EIDSKQSMPV ATTSAPGPVL PTASLVAVTN DMHTSPSVCM GLTSELCLSG SVPSCSTHPS 240 APNNQVDEFK EYDNTLSVND YNGNEKVDHP DLANNAEGGP YQDPNEIFGE LGDLDSLLGL 300 GEADLRGDPF SRGQEDECTT NEMLSTSSWF CGDGDFLELI DLDS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MADTKLIPGF RFHPTDVELI MYFLKRKILG RKFPFDVIAE LDIYKYAPWD LPDKSVLKTG  60
DLKWYFFCPR GMKYSTGGKL NRATEFGYWK TTGKDRSVEH KNQVVGMIRT LVFHIGRAPK  120
GDRTDWVMHE FRIEHKDLAD KGIPQDSYVI CRVFQKEGPG PRNGAQYGKP FNEEDWDEDE  180
EIDSKQSMPV ATTSAPGPVL PTASLVAVTN DMHTSPSVCM GLTSELCLSG SVPSCSTHPS  240
APNNQVDEFK EYDNTLSVND YNGNEKVDHP DLANNAEGGP YQDPNEIFGE LGDLDSLLGL  300
GEADLRGDPF SRGQEDECTT NEMLSTSSWF CGDGDFLELI DLDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	1	157	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	1	157	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	1	157	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	1	157	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-45	1	157	15	169	NAC domain-containing protein 19
3swm_B	3e-45	1	157	15	169	NAC domain-containing protein 19
3swm_C	3e-45	1	157	15	169	NAC domain-containing protein 19
3swm_D	3e-45	1	157	15	169	NAC domain-containing protein 19
3swp_A	3e-45	1	157	15	169	NAC domain-containing protein 19
3swp_B	3e-45	1	157	15	169	NAC domain-containing protein 19
3swp_C	3e-45	1	157	15	169	NAC domain-containing protein 19
3swp_D	3e-45	1	157	15	169	NAC domain-containing protein 19
4dul_A	2e-45	1	157	12	166	NAC domain-containing protein 19
4dul_B	2e-45	1	157	12	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269\|PubMed:20388856}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1304790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502931.1	1e-178	NAC domain-containing protein 82 isoform X1
Swissprot	Q9FY82	3e-87	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A1S2YE67	1e-177	A0A1S2YE67_CICAR; NAC domain-containing protein 82 isoform X1
STRING	XP_004502931.1	1e-178	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	3e-86	NAC domain containing protein 103

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]