PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v1341630.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 188aa MW: 21406.2 Da PI: 5.0431

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1341630.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.7	2.3e-32	9	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGf F+Ptdeelv ++L+ k++ +++ ++i+e++ ++Pw+L+ k+ ++ +++yfFsk + nr+t+ gyWk+ g ++++ls Lj1g3v1341630.1 9 LPPGFLFSPTDEELVLHFLHCKASFLPCHP-NIIPELHHSLLDPWELNGKAFSSGNQYYFFSKVN--------GNRSTEIGYWKEIGVTEPILS 93 79***********************999.89**********966667789999999864........489999************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e+vg+kk Lvfy g+ p+g++t+W+m+ey++ Lj1g3v1341630.1 94 AVDEKVGIKKYLVFYIGEPPQGTETSWMMQEYHI 127 9*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-40	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	37.853	9	161	IPR003441	NAC domain
Pfam	PF02365	8.8E-20	10	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MADGISINLP PGFLFSPTDE ELVLHFLHCK ASFLPCHPNI IPELHHSLLD PWELNGKAFS 60 SGNQYYFFSK VNGNRSTEIG YWKEIGVTEP ILSAVDEKVG IKKYLVFYIG EPPQGTETSW 120 MMQEYHICSS GLDSSPYPSA WGRRKPDMNW SKWVLCRVYE KKRSKQCVNC SCSDDDDSGS 180 ELSWLDEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-33	6	166	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-33	6	166	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-33	6	166	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-33	6	166	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	6	166	17	173	NAC domain-containing protein 19
3swm_B	2e-33	6	166	17	173	NAC domain-containing protein 19
3swm_C	2e-33	6	166	17	173	NAC domain-containing protein 19
3swm_D	2e-33	6	166	17	173	NAC domain-containing protein 19
3swp_A	2e-33	6	166	17	173	NAC domain-containing protein 19
3swp_B	2e-33	6	166	17	173	NAC domain-containing protein 19
3swp_C	2e-33	6	166	17	173	NAC domain-containing protein 19
3swp_D	2e-33	6	166	17	173	NAC domain-containing protein 19
4dul_A	3e-33	6	166	14	170	NAC domain-containing protein 19
4dul_B	3e-33	6	166	14	170	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1341630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361480.1	1e-100	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	2e-51	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A151ST19	5e-95	A0A151ST19_CAJCA; NAC domain-containing protein 68
STRING	GLYMA04G38990.1	4e-95	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-48	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]