PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1649020.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 228aa    MW: 26033.8 Da    PI: 9.4311
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1649020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87e-17130219198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp +f+ ++   ++++ ++tl de+g ++   +  rkk+    l++GW++F+ a++L +gD ++F+l++rs+f  +v
  Lj1g3v1649020.1 130 FIKSMLQSHVTGGFWLGLPCHFCIDNL--PKQDEMITLIDEDGDEYPTVYLARKKG----LSGGWRGFAIAHDLADGDALIFQLTNRSTF--KV 215
                      89*********************9994..336679***************667776....9***********************999999..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Lj1g3v1649020.1 216 YIIR 219
                      8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-24124220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-19125219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-26128219No hitNo description
PfamPF023628.7E-15130219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323130221IPR003340B3 DNA binding domain
SMARTSM010191.9E-20130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVAKYEESRR KRLEENKKRM EALNLPQLSQ ALRNSPSPKP SPLKQVKSRT IQKDLVVVRR  60
SGRVANMPAP VYKEILIDSV KIPRIRRAYT NTSKYRDYSN RVYASMEDRE EAMEKADKLL  120
EDLGSDHPAF IKSMLQSHVT GGFWLGLPCH FCIDNLPKQD EMITLIDEDG DEYPTVYLAR  180
KKGLSGGWRG FAIAHDLADG DALIFQLTNR STFKVYIIRV DSPSEDTA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1649020.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523918.11e-120B3 domain-containing protein At5g42700
RefseqXP_028227628.11e-120B3 domain-containing protein At5g42700-like
SwissprotQ69V362e-77Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLI3SCU01e-127I3SCU0_LOTJA; Uncharacterized protein
STRINGGLYMA04G04030.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-77B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]