PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v1649030.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Protein Properties

Length: 226aa MW: 25816.4 Da PI: 10.0144

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1649030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.7	1.9e-17	127	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k +++s+v+ +l lp +f++++ +k ++ +tl de+g +++ + ++ + l++GWk+F+ a++L +gD +vF+l++r+ f +v Lj1g3v1649030.1 127 FTKPMLQSHVSGGFWLGLPVHFCRKNL-PK-QDGVITLIDEDGDEYSTIY--LPRKTG--LSGGWKGFAVAHDLADGDALVFQLIKRTAF--KV 212 899*******************994.33.4458***********..555544..***********************99999..88 PP EEE- CS B3 95 kvfr 98 ++r Lj1g3v1649030.1 213 YIIR 216 8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.51E-24	121	218	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-20	122	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.61E-28	125	216	No hit	No description
SMART	SM01019	5.2E-25	127	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-15	127	216	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.393	127	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVAQYEEIRR QRVEENRKRM EALNLPQLSH ALRKSPSPKP SPLKQVKSRT TQKELVEVRR 60 SSRVANMPTP VYKEVSVDTG KMPRIRRAYN KHRDYSNRVY ASDEDREEAF ERAEKLLEDL 120 GSEFPAFTKP MLQSHVSGGF WLGLPVHFCR KNLPKQDGVI TLIDEDGDEY STIYLPRKTG 180 LSGGWKGFAV AHDLADGDAL VFQLIKRTAF KVYIIRVNSP PEGTTA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.18033	0.0	cell culture

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1649030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT138287	0.0	BT138287.1 Lotus japonicus clone JCVI-FLLj-2N11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523918.1	1e-124	B3 domain-containing protein At5g42700
Refseq	XP_028227628.1	1e-124	B3 domain-containing protein At5g42700-like
Swissprot	Q69V36	3e-79	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
Swissprot	Q9FMZ4	1e-79	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	I3SCU0	1e-167	I3SCU0_LOTJA; Uncharacterized protein
STRING	GLYMA04G04030.1	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-73	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]