PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1784260.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 201aa    MW: 23337.1 Da    PI: 7.9913
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1784260.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.3e-0979100426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +C++ ++ G+C++Gd+C+FaHg
  Lj1g3v1784260.1  79 TPCPDLRK-GYCNRGDSCHFAHG 100
                      68******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-771102IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-575101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.88E-575104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.91176102IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-779100IPR000571Zinc finger, CCCH-type
SMARTSM0035616110133IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MLQIRNLQIP DWDHDTLSVN AFATTPTEDF SSTDHFRMFD FKVNLCQRGR PHDWTDCPYA  60
HPGEKARRRD PRKHHYSATP CPDLRKGYCN RGDSCHFAHG VFECWLHPSR YRTQPCKDGT  120
FCRRRVCFFA HTANQLRVLN HEHVLSSPTS VLNSSSTLST KSFRYGVVSA FSVDEIVRSM  180
RNVQLDEGSE PDFEWISELV K
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.116180.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269|PubMed:16778011}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1784260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027355694.13e-75zinc finger CCCH domain-containing protein 20-like
SwissprotO823075e-64C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
SwissprotQ9FU272e-63C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2Z6N5E31e-72A0A2Z6N5E3_TRISU; Uncharacterized protein
STRINGAES733586e-73(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.25e-63C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]