PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1798550.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 238aa    MW: 26783.2 Da    PI: 5.0557
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1798550.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-161160255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a + a   l+g
  Lj1g3v1798550.1 11 LYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDCALYLLRG 60
                     59****999.**********933...5******************999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-261070No hitNo description
PROSITE profilePS5103221.3911168IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-191169IPR016177DNA-binding domain
SMARTSM003801.8E-281174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-271169IPR001471AP2/ERF domain
PRINTSPR003676.0E-91223IPR001471AP2/ERF domain
PfamPF008472.0E-91258IPR001471AP2/ERF domain
PRINTSPR003676.0E-93450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MASSSSDNNK LYKGVRKRKW GKWVSEIRLP NSRERIWLGS YDSPEKAARA FDCALYLLRG  60
RHASFNFPDT PFNLDINVAA AAGNQSLTPQ EIQEVAAKFG NQYQPQQQHH HHQQSSDIAN  120
FESHIGRESN FTTTAASSSN STITMHEQCG ATMQVEENGS MMNTIDWTFL NVLDNESNTN  180
NNGGINLGGE YGLYSSELDK MHSGDFQFYS APPTTPYEDN IADDLFSNQS SFLWSWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1412681572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1798550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049560.0AP004956.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34I04, TM0133, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356634.11e-73ethylene-responsive transcription factor ERF013-like
TrEMBLA0A140WWF11e-178A0A140WWF1_LOTCO; AP2/ERF
STRINGGLYMA06G06101.11e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-40ERF family protein