PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1821110.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 103aa    MW: 11430.3 Da    PI: 4.2386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1821110.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-0580102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Lj1g3v1821110.1  80 FSCNYCQRKFYNSQALGGHQNAH 102
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-577102No hitNo description
PROSITE profilePS5015710.49280103IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
METLSQEQNQ TEIKQQHVEE VEEENEAKKE TSLDLNVSGN DSAFGCSSQL NLNTCLDMDL  60
CKASSDNPPD GSDVAEARVF SCNYCQRKFY NSQALGGHQN AHK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.219711e-171cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1821110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356907.13e-32zinc finger protein 1-like
TrEMBLA0A0R0JJ423e-28A0A0R0JJ42_SOYBN; Uncharacterized protein
STRINGGLYMA06G06750.11e-28(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-16C2H2 family protein