PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1913900.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25351.6 Da    PI: 9.835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1913900.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.22.5e-091251241
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     ri + s+r+ ++ kR +g  KK +E+ +LCd+++++i++ 
  Lj1g3v1913900.1 12 RILERSKRKSSWKKRVAGAKKKLSEVTTLCDVKACLIMYP 51
                     677899********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.75350IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-4362IPR002100Transcription factor, MADS-box
CDDcd002666.14E-16493No hitNo description
PRINTSPR004041.5E-5525IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-145100IPR002100Transcription factor, MADS-box
PfamPF003192.3E-81250IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-52540IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-54061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVSARGKVKL TRILERSKRK SSWKKRVAGA KKKLSEVTTL CDVKACLIMY PLDDPLDHKP  60
LETVVWPSHE GAREVIAKYM SENELVRGKR MANPESHMQE MVVKATAKLD KQMYEIKIKQ  120
MKLCMMKCFE IGRVPPNLSL DDTNLMGNLI DRYLMDIDLR LKKLEMEEEE AHQNQAATTV  180
AGASRNKGKE PMNYDASRNK GKEPMNYDAS RNKGKEPMNY D
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1913900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.17e-19AGAMOUS-like 92