PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v1932810.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 198aa MW: 23226.8 Da PI: 10.0951

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1932810.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.5	6.9e-11	67	117	43	90
FAR1 43 eekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++k ++++++r+r+++r++C k++v+k++ d+kw+v+ + ++HnHel Lj1g3v1932810.1 67 QSKVSEVENQRKRKTSRCNCGSKMVVTKRTigfDEKWVVKYFYNHHNHELL 117 44445689999****************9999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-8	68	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MSGFLMKGKY LILMMMLMNF TIYLHIKVAF RLDVIISTNL VSISQRRIHW VSIKGNLFVI 60 VLVIPKQSKV SEVENQRKRK TSRCNCGSKM VVTKRTIGFD EKWVVKYFYN HHNHELLDDK 120 EVKFLPAYPQ SCILQFLMLV LDSEQMIFES LRRNFIFSVL IAAMFVSQEV AIAATTFFKY 180 CTATVVKLFR FYFMAVEC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	80	QRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1932810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-13	FAR1-related sequence 11