PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2035100.1
Common NamebZIP-R91
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 186aa    MW: 20499.4 Da    PI: 5.3194
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2035100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.15.9e-16131177349
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                      ++kr rrk +NRe+ArrsR+RK+a ++eLe+ v++L+ eN +L k+ 
  Lj1g3v2035100.1 131 DVKRLRRKVSNRESARRSRRRKQAHLAELETQVEKLKLENATLYKQF 177
                      68*****************************************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.9E-13127184No hitNo description
SMARTSM003382.8E-10129186IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.691131186IPR004827Basic-leucine zipper domain
PfamPF001701.5E-13132177IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-11133183No hitNo description
CDDcd147021.19E-7134185No hitNo description
PROSITE patternPS000360136151IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASSETADLN EFLNLDYDHL RYPDTADALF NTVCSAAFHN LLPDVVSSFS TCGGVTVTDT  60
LYSQKLTPKC STVTATNDSQ SSICVGSPVS ANKPNMGGEN HLKGTSSGSS DRSDEDDDEA  120
GPCEQSNNPQ DVKRLRRKVS NRESARRSRR RKQAHLAELE TQVEKLKLEN ATLYKQFTDA  180
SQQFRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135151RRKVSNRESARRSRRRK
2145152RRSRRRKQ
3147152SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.31810.0floral bud| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
UniprotTISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269|PubMed:7919992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2035100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786290.0AB378629.1 Lotus japonicus bZIP-R91 mRNA for transcription factor bZIP, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501207.12e-78bZIP transcription factor RISBZ4-like
SwissprotQ6ETX02e-38RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
SwissprotQ6H5001e-38RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLB3IX291e-134B3IX29_LOTJA; Transcription factor bZIP
STRINGXP_004501207.16e-78(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.15e-22basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S
    A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.
    Plant Physiol., 2008. 147(4): p. 2030-40
    [PMID:18567832]
  4. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]