PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2113670.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 85aa    MW: 10007.1 Da    PI: 9.6283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2113670.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09348447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     WT eE  ++ da + +G++   +W  +a+ +g g++  ++k  +  +
  Lj1g3v2113670.2  3 WTREENRRFEDALAVYGPEdpnRWQHVANAVG-GKSVDEVKRQYEVL 48
                     *****************99*************.********999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.094153IPR017884SANT domain
SuperFamilySSF466894.56E-12256IPR009057Homeodomain-like
PfamPF002491.2E-7347IPR001005SANT/Myb domain
CDDcd001672.55E-7349No hitNo description
SMARTSM007171.1E-5351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-6355IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MGWTREENRR FEDALAVYGP EDPNRWQHVA NAVGGKSVDE VKRQYEVLKE DVKRIERDQV  60
PFPRYRGSAS GINEHNRRLK NLNVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-223851193RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2113670.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1492751e-131BT149275.1 Lotus japonicus clone JCVI-FLLj-11E23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356235.14e-42protein RADIALIS-like 6
TrEMBLI3T9772e-52I3T977_LOTJA; Uncharacterized protein
STRINGGLYMA06G03460.15e-39(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-26RAD-like 1