PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2296480.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 85aa    MW: 9660.79 Da    PI: 9.0882
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2296480.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-091662347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      W++   +l+ +a +++  +   +W  +++ +g g++ +++k ++  +
  Lj1g3v2296480.1 16 TWSPKQNKLFERALAKYDEDtpeRWQNVSKAVG-GKSVEEVKRHYERL 62
                     7********************************.***********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4361267IPR017884SANT domain
SMARTSM007175.9E-91365IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-121571IPR009057Homeodomain-like
CDDcd001671.57E-71663No hitNo description
PfamPF002491.1E-71663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-51669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASSSMSKQK ACDSSTWSPK QNKLFERALA KYDEDTPERW QNVSKAVGGK SVEEVKRHYE  60
RLLEDLKHIE SGHVPFPTYK STTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-2917821176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2296480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045461e-141AP004546.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43N05, TM0178, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540679.11e-44protein RADIALIS-like 4
RefseqXP_028194174.11e-44protein RADIALIS-like 4
SwissprotF4JVB83e-31RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445HKP92e-43A0A445HKP9_GLYSO; Protein RADIALIS-like 1
TrEMBLK7LSY92e-43K7LSY9_SOYBN; Uncharacterized protein
STRINGGLYMA12G04680.24e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-33RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]