PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2372270.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 77aa    MW: 8633.9 Da    PI: 10.1154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2372270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000331537223
                     EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                     +C+ C  +F+++ +L +H+   H
  Lj1g3v2372270.1 15 RCTLCVAVFKTNAELAKHLLDtH 37
                     6*****************97655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.0E-41233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801637IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MDSFATSPQS ARPRRCTLCV AVFKTNAELA KHLLDTHPDH YQLGEASDAR LPPYPRPELP  60
LPSSARYARA AKIRSRM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2372270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-