PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2580600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 818aa    MW: 89039.2 Da    PI: 6.3723
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2580600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.29.7e-1264528072374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLl+cAeavs+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp ++ s    +++++a+++f+ +sP++kfsh
  Lj1g3v2580600.1 452 LTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTPLS----QKVASAFQVFNGISPFVKFSH 541
                      579************************************************************999996....89999**************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      +taNqaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +l
  Lj1g3v2580600.1 542 FTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFASKLGLPFEFFP-VAEKVGNL 630
                      ******************************************************....***************************.7******* PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++e+L+v++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl +++++eseer+
  Lj1g3v2580600.1 631 DPERLNVSKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERH 717
                      ******************9..999999999999....*******************97.699******************************** PP

             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +vE++ll+rei+nv+a  g +r+ + + +++Wre+l+++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lgWkd  L+++SaWr
  Lj1g3v2580600.1 718 VVEQQLLSREIRNVLAVGGPSRTGEIK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 807
                      *********************998887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.319425787IPR005202Transcription factor GRAS
PfamPF035143.4E-123452807IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MAACALFTGG VNTTEEGNVT NNNNNCGSSS NSSNMSSEEQ QHTLLQTMPQ PHSERKMVRK  60
RMASEMELHH NNNNINNSTA TRFSRRSSTN MSSMNCSLPA TEKAAAAAAT TPTTLAAGTC  120
NNNNNYHYNN STNNNNINNN NNGLSHSSTL SRDNVAAAIQ IPNYPTVTVT TNYSTMLLPS  180
SIVNSSASSI PSSTTIASPN YHFQGLVENQ NQNQTQDQNP VPQVCGFSGL PLFPSQNQRN  240
NNRNSGSSGV VEVVSASSPS MDDTSATSNW IDGILKDLIN SSNTVSIPQL ISNVREIIYP  300
CNPNLAVVLE HRLRLLTESA PPPSSSVEQR KRGLPPPNGI VPSLHFPDPS VNQNMYSNWG  360
VPPINNPNNT NNNNPSVSLI TLPSPPSTHQ SYSPSQEKQQ QQHQQNQEED LAVAASAAAA  420
AATSSAEMVL ARKKKEEIQE QKKKDEEGLH LLTLLLQCAE AVSAENLEDA NKMLLEISQL  480
STPFGTSAQR VAAYFSEAIS ARLVSSCLGI YATLPHTPLS QKVASAFQVF NGISPFVKFS  540
HFTANQAIQE AFDREERVHI IDLDIMQGLQ WPGLFHILAS RPGGPPYVRL TGLGTSMEAL  600
EATGKRLSDF ASKLGLPFEF FPVAEKVGNL DPERLNVSKT EAVAVHWLQH SLYDVTGSDT  660
NTLWLLQRLA PKVVTVVEQD LSNAGSFLGR FVEAIHYYSA LFDSLGSSYG EESEERHVVE  720
QQLLSREIRN VLAVGGPSRT GEIKFHNWRE KLQQCGFRGI SLAGNAATQA SLLLGMFPSE  780
GYTLVEDNGI LKLGWKDLCL LTASAWRPPF TAIPHHHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04348083380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.28999e-34pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269|PubMed:11333309}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2580600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105420.0AP010542.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB20B09, BM1478, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335320.10.0protein SCARECROW-like
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLV7B5590.0V7B559_PHAVU; Uncharacterized protein
STRINGXP_007140014.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein